Difference: JoshuaSchroeder (1 vs. 32)

Revision 32
28 Apr 2016 - Main.JoshSchroder
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META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
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  • Draco_ttbar_Pythia_lifetime_comparison.pngSegue1_WW_Pythia_lifetime_comparison.pngSegue1_bbbar_Pythia_lifetime_comparison.png
  • Segue1_mumu_Pythia_lifetime_comparison.pngSegue1_tautau_Pythia_lifetime_comparison.pngSegue1_ttbar_Pythia_lifetime_comparison.png
  • The above procedure failed to generate the scale factors for Draco WW for pythia 6, and so it isn't shown above. Also, the plot for Segue1 WW looks strange, as it has a larger disparity than any of the other channels for pythia 6 vs pythia 8.
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April 28, 2016
  • I made my presentation for UURAF on FDR and gave it. I have attached the pdf of the slideshow here.
  • I tried to run the FDR again on the newest maps, but while the onplane output of getHistogramData.py was fine, the Offplane data ouput a histogram with only sigma values that were absurdly low (as in negative 3 trillion sigma). I am not sure what went wrong.
  • This last week I started a small FDR project to look at the TeVCat list and see what the sigma and FDR cutoffs for this list are. After some phenagling, Tolga and I got the Tevcat list loaded with its RA and DEC coordinates, and managed to extract their sigma. (see here for the tevcat list and here for the output of this script that got the sigma at each tevcat source (make sure to set a small radius, such as .001)) For sources out of the HAWC field of view, it has a sigma of -3275********* (very large number). I have not had time to make any plots with this yet.
 

Tasks(2014-2015)

New shift wizard list 2/3/15

  • water levels link
Line: 177 to 182
 
META FILEATTACHMENT attachment="Segue1_ttbar_Pythia_lifetime_comparison.png" attr="" comment="" date="1458836798" name="Segue1_ttbar_Pythia_lifetime_comparison.png" path="Segue1_ttbar_Pythia_lifetime_comparison.png" size="38823" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="bigkahoona.sh" attr="" comment="" date="1458928908" name="bigkahoona.sh" path="bigkahoona.sh" size="2874" user="JoshSchroder" version="1"
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META FILEATTACHMENT attachment="UURAF_Presentationv2.2.pdf" attr="" comment="" date="1461858701" name="UURAF_Presentationv2.2.pdf" path="UURAF_Presentationv2.2.pdf" size="3141882" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="tevcat_list.dat" attr="" comment="" date="1461859062" name="tevcat_list.dat" path="tevcat_list.dat" size="5257" user="JoshSchroder" version="1"
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Revision 31
14 Apr 2016 - Main.JoshSchroder
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META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 176 to 176
 
META FILEATTACHMENT attachment="HAWC_abstract.docx" attr="" comment="" date="1458835750" name="HAWC_abstract.docx" path="HAWC abstract.docx" size="93535" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="Segue1_ttbar_Pythia_lifetime_comparison.png" attr="" comment="" date="1458836798" name="Segue1_ttbar_Pythia_lifetime_comparison.png" path="Segue1_ttbar_Pythia_lifetime_comparison.png" size="38823" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="bigkahoona.sh" attr="" comment="" date="1458928908" name="bigkahoona.sh" path="bigkahoona.sh" size="2874" user="JoshSchroder" version="1"
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META FILEATTACHMENT attachment="HAWC_sticker.png" attr="" comment="This is test" date="1460651180" name="HAWC_sticker.png" path="HAWC sticker.png" size="48524" user="JoshSchroder" version="1"
Revision 30
25 Mar 2016 - Main.JoshSchroder
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META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
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META FILEATTACHMENT attachment="HAWC111+250.png" attr="" comment="" date="1450122863" name="HAWC111+250.png" path="HAWC111+250.png" size="117939" user="JoshSchroder" version="1"
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META FILEATTACHMENT attachment="bigkahoona.sh" attr="" comment="" date="1458835562" name="bigkahoona.sh" path="bigkahoona.sh" size="2855" user="JoshSchroder" version="1"
 
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META FILEATTACHMENT attachment="Segue1_WW_Pythia_lifetime_comparison.png" attr="" comment="" date="1458835727" name="Segue1_WW_Pythia_lifetime_comparison.png" path="Segue1_WW_Pythia_lifetime_comparison.png" size="40382" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="HAWC_abstract.docx" attr="" comment="" date="1458835750" name="HAWC_abstract.docx" path="HAWC abstract.docx" size="93535" user="JoshSchroder" version="1"
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META FILEATTACHMENT attachment="bigkahoona.sh" attr="" comment="" date="1458928908" name="bigkahoona.sh" path="bigkahoona.sh" size="2874" user="JoshSchroder" version="1"
Revision 29
24 Mar 2016 - Main.JoshSchroder
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META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 33 to 33
 
  • A curiousity I leave for others to figure out I discovered while looking at some HAWC 250 data. For the May 4, 2015 reconstruction, (maps-2015-aligned in the maps folder on the UMD cluster) there are two significance maps, one made with only the HAWC 250 data, and one with the HAWC 111 and the HAWC 250 data. When looking at my best candidate source in the old data, you see a small 2-3 significance bump at the location where the source forms in the HAWC 300 data for the HAWC 250 data, but when you take both the HAWC 111 data and the HAWC 250 data, the source disappears. Shown below, in order of left to right, are: HAWC 300 data, HAWC 250 data, HAWC 250 and HAWC 111 data.
    • significance_combined_map2-hs15.pngHAWC250.pngHAWC111+250.png
    • It may be that there is some asymmetry in the way we reconstructed the 111 vs the 250 data, or maybe the 111 data was anomalous enough to drown out the significance bump, but regardless, this may be interesting, or it may be nothing. Possibly something to look into later?
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March 24, 2016
  • Firstly, early this semester I looked at some significance maps with the newly reconstructed data. Unfortunately, it appears that most to all of the prospective sources I saw with the prior FDR analysis shrank or disappeared entirely in the new reconstruction. Bummer.
  • I wrote and submitted an abstract for the UURAF event this April 8. For future reference, the abstract can be found here.
  • I started Dark Matter Analysis, with a comparison of Pythia 6 and Pythia 8. I followed the outline of some scripts Tolga sent me to generate plots of the lifetime vs mass curves for the sources Draco and Segue1, for the channels ttbar, bbbar, tautau, mumu, and WW for both Pythia 6 and Pythia 8. First, there is a script that converts livetime to flux; it takes in an assumed lifetime, a source, a channel, and a mass measurement and calculates what the flux should be. An iterative script I willl list below runs through the energies 1, 2, 4, 6, 10, 20, 40, 60, 100, 200, 400, 600, and 1000TeV for each source listed and each channel. Then, I us liff to perform a fit on the data to determine by what factor the lifetime would need to be scaled to give the appropriate flux for this source (I'm not solid on the nuances of how this works), which the script also does iteratively. Next, I call on a python script that runs over all the output files this makes and sorts the scale factors into an array for each channel for each source (mass in one column, scale factor in the other column), and outputs this to a file. Finally, I run a script that iteratively plots these arrays in pyplot.
  • All of the work was done on the cluster. convert_lifetime_to_flux.py.txt is the script that converted lifetime to flux using pythia 8, convert_spectra_to_flux_decay_pat.py.txt does the same thing, but using pythia 6, make_arrays.py.txt takes the outpout from these files and turns it into an array, and draw_plots.py.txt will plot those arrays (in all of these files, remove the .txt). The script bigkahoona.sh will run all of the above scripts, for all of the sources and channels listed in the array at the top as long as the above scripts are in the same directory as bigkahoona.sh (the arrays in make_arrays.py and draw_plots.py also must be modified).
  • The output of the above procedures were the following plots:
  • Draco_bbbar_Pythia_lifetime_comparison.pngDraco_mumu_Pythia_lifetime_comparison.pngDraco_tautau_Pythia_lifetime_comparison.png
  • Draco_ttbar_Pythia_lifetime_comparison.pngSegue1_WW_Pythia_lifetime_comparison.pngSegue1_bbbar_Pythia_lifetime_comparison.png
  • Segue1_mumu_Pythia_lifetime_comparison.pngSegue1_tautau_Pythia_lifetime_comparison.pngSegue1_ttbar_Pythia_lifetime_comparison.png
  • The above procedure failed to generate the scale factors for Draco WW for pythia 6, and so it isn't shown above. Also, the plot for Segue1 WW looks strange, as it has a larger disparity than any of the other channels for pythia 6 vs pythia 8.
 

Tasks(2014-2015)

New shift wizard list 2/3/15

  • water levels link
Line: 150 to 161
 
META FILEATTACHMENT attachment="HAWC111+250.png" attr="" comment="" date="1450122863" name="HAWC111+250.png" path="HAWC111+250.png" size="117939" user="JoshSchroder" version="1"
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META FILEATTACHMENT attachment="bigkahoona.sh" attr="" comment="" date="1458835562" name="bigkahoona.sh" path="bigkahoona.sh" size="2855" user="JoshSchroder" version="1"
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META FILEATTACHMENT attachment="Draco_ttbar_Pythia_lifetime_comparison.png" attr="" comment="" date="1458835673" name="Draco_ttbar_Pythia_lifetime_comparison.png" path="Draco_ttbar_Pythia_lifetime_comparison.png" size="38700" user="JoshSchroder" version="1"
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META FILEATTACHMENT attachment="HAWC_abstract.docx" attr="" comment="" date="1458835750" name="HAWC_abstract.docx" path="HAWC abstract.docx" size="93535" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="Segue1_ttbar_Pythia_lifetime_comparison.png" attr="" comment="" date="1458836798" name="Segue1_ttbar_Pythia_lifetime_comparison.png" path="Segue1_ttbar_Pythia_lifetime_comparison.png" size="38823" user="JoshSchroder" version="1"
Revision 28
14 Dec 2015 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 24 to 24
 
    • As you can see, they are around -43 to -44 in Declination. In fact, all such suspicious sources occured within a 2 degree strip along the top or bottom of the equitorial map. Therefore, I advise removing everything above 80 deg and everything below -41 deg when making the significance map. The bright single pixel sources above do not seem to be present in the maps of the data and the background that i looked at when we zoomed in on these sources, so I suspect there is some error in the smoothing or significance map making code that is generating these.
    • All in all, I saw 15 hotspots with a sigma > 4.225 that have not been seen with other projects so far, however the cutoff I should have used is 5.49 sigma, so these candidate sources cannot be verified to 99.99% certainty with the methods I have used thus far. However, If anyone wants to examine these further, I will attach their RA and Dec coordinates here.
November 18, 2015
Changed:
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  • I have been installing SExtractor for some time now. It's been a journey, and I have decided to make a separate page describing how I installed SExtractor here.
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  • I have been installing SExtractor for some time now. It's been a journey, and I have decided to make a separate page describing how I installed SExtractor.
  • <update> the problem with SExtractor is that our fits files are missing the necessary headers to run SExtractor with, so until we change the format of our fits files, we will not be able to run sextractor. Udara was able to get sextractor to work by adding additional headers, but did not remember which headers he added.
December 14, 2015
  • I have updated the HAWC website, including changing the tenses of certain phrases ("hawc will be completed" to "hawc was completed", etc) and updating to people list. We are planning to update the photo to one of HAWC 300 and move the people list to the right side of the page and the collaborator list to the bottom, but these changes will need to be made after winter break, as I am out of time this semester
  • I did a little more FDR stuff: firstly, I reran the FDR scripts on the offplane skymap, this time masking out the Crab and the Markarians. The modification basically amounted to copying the section of Tolga's getHistogramData.py and changing the coordinates excluded from those of the galactic plane to those of a small bin around the crab. Then, you repeat for the markarians. The final script looks like this. The output sigmas are on average .25 sigma higher than before masking out the crab and the markarians, and looks like this.
  • I ran getHotSpots.py with 50% contamination or less to see what we got. The resulting sourcelist may be interesting to compare with when we get more data. The candidate sources with contamination of 10%-50% are here.Those with a contamination of <10% are listed here. The full sourcelist, including known sources is here. I didn't have time to make a separate file with only the known sources.
  • A curiousity I leave for others to figure out I discovered while looking at some HAWC 250 data. For the May 4, 2015 reconstruction, (maps-2015-aligned in the maps folder on the UMD cluster) there are two significance maps, one made with only the HAWC 250 data, and one with the HAWC 111 and the HAWC 250 data. When looking at my best candidate source in the old data, you see a small 2-3 significance bump at the location where the source forms in the HAWC 300 data for the HAWC 250 data, but when you take both the HAWC 111 data and the HAWC 250 data, the source disappears. Shown below, in order of left to right, are: HAWC 300 data, HAWC 250 data, HAWC 250 and HAWC 111 data.
    • significance_combined_map2-hs15.pngHAWC250.pngHAWC111+250.png
    • It may be that there is some asymmetry in the way we reconstructed the 111 vs the 250 data, or maybe the 111 data was anomalous enough to drown out the significance bump, but regardless, this may be interesting, or it may be nothing. Possibly something to look into later?
 

Tasks(2014-2015)

New shift wizard list 2/3/15

  • water levels link
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  • graphs (good)
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  • graphs (good)
 
    • TDC error rate
    • TDC error ratio
    • max PE
Line: 134 to 142
 
META FILEATTACHMENT attachment="significance_combined_map-hs3.png" attr="" comment="" date="1447699603" name="significance_combined_map-hs3.png" path="significance_combined_map-hs3.png" size="192512" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="significance_combined_map-hs7.png" attr="" comment="" date="1447699618" name="significance_combined_map-hs7.png" path="significance_combined_map-hs7.png" size="227463" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="goodsources.dat" attr="" comment="" date="1447700289" name="goodsources.dat" path="goodsources.dat" size="916" user="JoshSchroder" version="1"
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META FILEATTACHMENT attachment="getcutHistogramData.py.txt" attr="" comment="" date="1450122016" name="getcutHistogramData.py.txt" path="getcutHistogramData.py" size="6876" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="cutoutputoffplane_conservative_sigmas.dat" attr="" comment="" date="1450122309" name="cutoutputoffplane_conservative_sigmas.dat" path="cutoutputoffplane_conservative_sigmas.dat" size="126" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="candidate_above_.1contamination.dat" attr="" comment="" date="1450122449" name="candidate_above_.1contamination.dat" path="candidate_above_.1contamination.dat" size="10935" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="candidate_below_.1contamination.dat" attr="" comment="" date="1450122460" name="candidate_below_.1contamination.dat" path="candidate_below_.1contamination.dat" size="1440" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="significance_combined_map2-hotspots-sig.gt.2.8814.dat" attr="" comment="" date="1450122534" name="significance_combined_map2-hotspots-sig.gt.2.8814.dat" path="significance_combined_map2-hotspots-sig.gt.2.8814.dat" size="14040" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="HAWC111+250.png" attr="" comment="" date="1450122863" name="HAWC111+250.png" path="HAWC111+250.png" size="117939" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="HAWC250.png" attr="" comment="" date="1450122873" name="HAWC250.png" path="HAWC250.png" size="134509" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="significance_combined_map2-hs15.png" attr="" comment="" date="1450122974" name="significance_combined_map2-hs15.png" path="significance_combined_map2-hs15.png" size="433753" user="JoshSchroder" version="1"
Revision 27
18 Nov 2015 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 23 to 23
 
    • significance_combined_map-hs1.pngsignificance_combined_map-hs3.pngsignificance_combined_map-hs7.png
    • As you can see, they are around -43 to -44 in Declination. In fact, all such suspicious sources occured within a 2 degree strip along the top or bottom of the equitorial map. Therefore, I advise removing everything above 80 deg and everything below -41 deg when making the significance map. The bright single pixel sources above do not seem to be present in the maps of the data and the background that i looked at when we zoomed in on these sources, so I suspect there is some error in the smoothing or significance map making code that is generating these.
    • All in all, I saw 15 hotspots with a sigma > 4.225 that have not been seen with other projects so far, however the cutoff I should have used is 5.49 sigma, so these candidate sources cannot be verified to 99.99% certainty with the methods I have used thus far. However, If anyone wants to examine these further, I will attach their RA and Dec coordinates here.
Added:
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November 18, 2015
  • I have been installing SExtractor for some time now. It's been a journey, and I have decided to make a separate page describing how I installed SExtractor here.
 

Tasks(2014-2015)

New shift wizard list 2/3/15

  • water levels link
Revision 26
16 Nov 2015 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 19 to 19
 

November 13, 2015
  • I have learned a lot more about FDR after reading a paper about it and playing around with the output. The getHistogramData.py file actually generates two outputs that are histograms of data. Each pixel on the map is determined to be on the galactic plane or off the galactic plane, and its sigma value is put into one of the bins of the histogram. This output is in the files filenameonplane.dat and filenameoffplane.dat. processHistogramData.py will give you analyze one of these histograms and give you a sigma cutoff for that region for various levels of contamination, which are organized in a table in the output file, filenameoffplane_conservative_sigmas.dat, etc. The onplane sigma values should only be used when looking at the galactic plane, and so to look for offplane sources, one should use the output of the offplane sigma file.
Changed:
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  • Once you have the sigma cutoff, you can use the file plotHotSpots.py to output all of the sources on the map with
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  • Once you have the sigma cutoff, you can use the file plotHotSpots.py to output all of the sources on the map with a sigma higher than the cutoff using the script /path/to/hawc_software/aerie/src/map-maker/scripts/plotHotSpots.py. When I ran this code with (the incorrect) 4.225 sigma cutoff, I found bizarrely bright pixels on the very edges of the map, looking like this:
    • significance_combined_map-hs1.pngsignificance_combined_map-hs3.pngsignificance_combined_map-hs7.png
    • As you can see, they are around -43 to -44 in Declination. In fact, all such suspicious sources occured within a 2 degree strip along the top or bottom of the equitorial map. Therefore, I advise removing everything above 80 deg and everything below -41 deg when making the significance map. The bright single pixel sources above do not seem to be present in the maps of the data and the background that i looked at when we zoomed in on these sources, so I suspect there is some error in the smoothing or significance map making code that is generating these.
    • All in all, I saw 15 hotspots with a sigma > 4.225 that have not been seen with other projects so far, however the cutoff I should have used is 5.49 sigma, so these candidate sources cannot be verified to 99.99% certainty with the methods I have used thus far. However, If anyone wants to examine these further, I will attach their RA and Dec coordinates here.
 

Tasks(2014-2015)

New shift wizard list 2/3/15

  • water levels link
Line: 125 to 128
 

META FILEATTACHMENT attachment="Sigmap.png" attr="" comment="Significance map for 10 bins before cuts" date="1444749184" name="Sigmap.png" path="Sigmap.png" size="448112" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="sigcombinedmap2.png" attr="" comment="Significance map for 10 bins after cuts" date="1444750177" name="sigcombinedmap2.png" path="sigcombinedmap2.png" size="56603" user="JoshSchroder" version="1"
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>
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META FILEATTACHMENT attachment="significance_combined_map-hs1.png" attr="" comment="" date="1447699593" name="significance_combined_map-hs1.png" path="significance_combined_map-hs1.png" size="177768" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="significance_combined_map-hs3.png" attr="" comment="" date="1447699603" name="significance_combined_map-hs3.png" path="significance_combined_map-hs3.png" size="192512" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="significance_combined_map-hs7.png" attr="" comment="" date="1447699618" name="significance_combined_map-hs7.png" path="significance_combined_map-hs7.png" size="227463" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="goodsources.dat" attr="" comment="" date="1447700289" name="goodsources.dat" path="goodsources.dat" size="916" user="JoshSchroder" version="1"
Revision 25
13 Nov 2015 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 15 to 15
 
    • When I plot the significance map using </path/to/aerie/src/map-maker/scripts/plotMollweide.py significance_combined_map.fits.gz> I get Sigmap.png
    • You can see the crab on the right and the galactic plane on the left as a strip of green. However, other sources are somewhat hard to see.
    • I now run Tolga's scripts over the significance map. So first I run <python getHistogramData.py --input significance_combined_map.fits.gz --output output.fits.gz>. this should output four files. I was concerned only with output.fits.gzoffplane.dat and output.fits.gzonplane.dat. I ran processHistogramData.py on both of these files (<python processHistogramData.py --input output.fits.gzoffplane.dat>), generating two more files, output.fits.gzoffplane_conservative_sigmas.dat and output.fits.gzonplane_conservative_sigmas.dat.
Changed:
<
<
    • Taking a look at <less output.fits.gzonplane_conservative_sigmas.dat>, we see a list of values. The value corresponding to 0.000100 is the value we are looking for. My value was 4.225825. This is the cut we want to place on minimum sigma for spotting sources. So to plot the significance map with this cut, I ran </path/to/aerie/src/map-maker/scripts/plotMollweide.py significance_combined_map.fits.gz -m 4.225825 -M 20> This sets the minimum sigma to the value we obtained from Tolga's scripts and the maximum to 20. This plot looks like this:sigcombinedmap2.png



>
>
    • Taking a look at <less output.fits.gzonplane_conservative_sigmas.dat>, we see a list of values. The value corresponding to 0.000100 will give you the sigma cutoff after which the chance of seeing a random source at this sigma is .0001 (this is called the contamination). My value was 4.225825. This is the cut we want to place on minimum sigma for spotting sources. So to plot the significance map with this cut, I ran </path/to/aerie/src/map-maker/scripts/plotMollweide.py significance_combined_map.fits.gz -m 4.225825 -M 20> This sets the minimum sigma to the value we obtained from Tolga's scripts and the maximum to 20. This plot looks like this:sigcombinedmap2.png


      Edit: The file I should have been using to look at offplane sources is in file_name.offplane_conservative_sigmas.dat, and should have had a cutoff of about 5.49 sigma if I wanted a contamination of .0001

November 13, 2015
  • I have learned a lot more about FDR after reading a paper about it and playing around with the output. The getHistogramData.py file actually generates two outputs that are histograms of data. Each pixel on the map is determined to be on the galactic plane or off the galactic plane, and its sigma value is put into one of the bins of the histogram. This output is in the files filenameonplane.dat and filenameoffplane.dat. processHistogramData.py will give you analyze one of these histograms and give you a sigma cutoff for that region for various levels of contamination, which are organized in a table in the output file, filenameoffplane_conservative_sigmas.dat, etc. The onplane sigma values should only be used when looking at the galactic plane, and so to look for offplane sources, one should use the output of the offplane sigma file.
  • Once you have the sigma cutoff, you can use the file plotHotSpots.py to output all of the sources on the map with
 

Tasks(2014-2015)

New shift wizard list 2/3/15

  • water levels link
Revision 24
13 Oct 2015 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014

Joshua Schroeder's Page

Changed:
<
<

Tasks

>
>

Tasks (2015-2016)

Log Entries (2015-2016)

October 13, 2015
  • Recently I have been working with the FDR scripts. (I have aerie on my computer, but this could also be done on the UMD cluster)
    • I started by logging in to the umd cluster and downloading the smoothed map files from /data/archive/hawcroot/maps/maps-20150710-aligned/SmoothedMaps, as well as /data/archive/hawcroot/maps/maps-20150710-aligned/cuts.txt. (scp -r your_username@pa-pub.umd.edu:/data/archive/hawcroot/maps/maps-20150710-aligned/SmoothedMaps /path/to/folder/on/local/machine/, and a similar command for the cuts file)
    • I acquired three scripts from Tolga: getHistogramData.py, drawHistogram.py, and processHistogramData.py
    • I combined the 10 bins in SmoothedMaps into one significance map using the command: aerie-apps-make-significance-map --input combined_bin0.fits.gz 0 combined_bin1.fits.gz 1 combined_bin2.fits.gz 2 combined_bin3.fits.gz 3 combined_bin4.fits.gz 4 combined_bin5.fits.gz 5 combined_bin6.fits.gz 6 combined_bin7.fits.gz 7 combined_bin8.fits.gz 8 combined_bin9.fits.gz 9 -o significance_combined_map.fits.gz --sensi cuts.txt -M 90 -m -89
    • When I plot the significance map using </path/to/aerie/src/map-maker/scripts/plotMollweide.py significance_combined_map.fits.gz> I get Sigmap.png
    • You can see the crab on the right and the galactic plane on the left as a strip of green. However, other sources are somewhat hard to see.
    • I now run Tolga's scripts over the significance map. So first I run <python getHistogramData.py --input significance_combined_map.fits.gz --output output.fits.gz>. this should output four files. I was concerned only with output.fits.gzoffplane.dat and output.fits.gzonplane.dat. I ran processHistogramData.py on both of these files (<python processHistogramData.py --input output.fits.gzoffplane.dat>), generating two more files, output.fits.gzoffplane_conservative_sigmas.dat and output.fits.gzonplane_conservative_sigmas.dat.
    • Taking a look at <less output.fits.gzonplane_conservative_sigmas.dat>, we see a list of values. The value corresponding to 0.000100 is the value we are looking for. My value was 4.225825. This is the cut we want to place on minimum sigma for spotting sources. So to plot the significance map with this cut, I ran </path/to/aerie/src/map-maker/scripts/plotMollweide.py significance_combined_map.fits.gz -m 4.225825 -M 20> This sets the minimum sigma to the value we obtained from Tolga's scripts and the maximum to 20. This plot looks like this:sigcombinedmap2.png



Tasks(2014-2015)

 

New shift wizard list 2/3/15

  • water levels link
  • graphs (good)
Line: 54 to 67
 
  • logNPE plot link doesn't seem to work (fixed)
  • Main Dashboard link fix (fixed)
  • Reference plots
Changed:
<
<

List of Log Entries

>
>

List of Log Entries (2014-2015)

 

September 23, 2014
  • Tried to figure out the wiki
Line: 105 to 118
 
  • Creating new to do list for shiftwizard.
Apr 6, 2015
  • Edited the poster for the Event Display. The new poster should be in the HAWC dropbox
Added:
>
>

META FILEATTACHMENT attachment="Sigmap.png" attr="" comment="Significance map for 10 bins before cuts" date="1444749184" name="Sigmap.png" path="Sigmap.png" size="448112" user="JoshSchroder" version="1"
META FILEATTACHMENT attachment="sigcombinedmap2.png" attr="" comment="Significance map for 10 bins after cuts" date="1444750177" name="sigcombinedmap2.png" path="sigcombinedmap2.png" size="56603" user="JoshSchroder" version="1"
Revision 23
06 Apr 2015 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 103 to 103
  Feb 3, 2015
  • Tolga showed me how to enter questions into the new shift wizard, and I have entered some questions
  • Creating new to do list for shiftwizard.
Added:
>
>
Apr 6, 2015
  • Edited the poster for the Event Display. The new poster should be in the HAWC dropbox
Revision 22
03 Feb 2015 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014

Joshua Schroeder's Page

Tasks

Added:
>
>

New shift wizard list 2/3/15

  • water levels link
  • graphs (good)
    • TDC error rate
    • TDC error ratio
    • max PE
    • log NPE
    • Reconstructed Core
    • azimuth angle
    • zenith angle
    • Dec vs Ra
    • edge hits
  • TDC error rate
  • TDC trigger rate
  • Status of HVAC
  • input/output voltages and temp of UPS
  • Status of GTC
  • Weather/temperature
  • temp in counting house, main computer rack, and FEB1 crate: Analog Front + glance at others
  • TDC and scalar disk space
 

Event Display

Changed:
<
<
  • Slideshow
>
>
  • Slideshow (done)
 
  • New poster
  • Boot up automatically (Fixed)
  • Sam's List
Line: 18 to 38
 

Fix up HAWC website

Things to fix
Changed:
<
<
  • header image?
>
>
  • header image? (fixed)
 
  • Milagro links

Set up Shift Wizard

Line: 80 to 100
 
  • I have been working on a slideshow to go with the event display.
January 27, 2015
  • finished the powerpoint presentation.
Added:
>
>
Feb 3, 2015
  • Tolga showed me how to enter questions into the new shift wizard, and I have entered some questions
  • Creating new to do list for shiftwizard.
Revision 21
27 Jan 2015 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 78 to 78
  January 14, 2015
  • got the event display to begin displaying events automatically on reboot. I used the crontab to change this by entering the command: sudo crontab -e. From there, you enter the time you want the command to execute followed by the command. I went ahead and entered the command to run on boot for both the superuser and the "hawc" user, just in case.
  • I have been working on a slideshow to go with the event display.
Added:
>
>
January 27, 2015
  • finished the powerpoint presentation.
Revision 20
14 Jan 2015 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 7 to 7
 

Event Display

  • Slideshow
  • New poster
Changed:
<
<
  • Boot up automatically
>
>
  • Boot up automatically (Fixed)
 
  • Sam's List

Fix HV/LV links

Line: 75 to 75
 
  • Fixed up the MSU HAWC public website
November 12, 2014
  • Made further changes to the MSU HAWC public website
Changed:
<
<
November 17, 2014
  • Done with A Thin Cosmic Rain
>
>
January 14, 2015
  • got the event display to begin displaying events automatically on reboot. I used the crontab to change this by entering the command: sudo crontab -e. From there, you enter the time you want the command to execute followed by the command. I went ahead and entered the command to run on boot for both the superuser and the "hawc" user, just in case.
  • I have been working on a slideshow to go with the event display.
Revision 19
17 Nov 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014

Joshua Schroeder's Page

Tasks

Added:
>
>

Event Display

  • Slideshow
  • New poster
  • Boot up automatically
  • Sam's List
 

Fix HV/LV links

Things to fix
Line: 70 to 75
 
  • Fixed up the MSU HAWC public website
November 12, 2014
  • Made further changes to the MSU HAWC public website
Added:
>
>
November 17, 2014
  • Done with A Thin Cosmic Rain
Revision 18
13 Nov 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 68 to 68
 
  • Updated the page describing how to edit the HV Measurements
November 5, 2014
  • Fixed up the MSU HAWC public website
Added:
>
>
November 12, 2014
  • Made further changes to the MSU HAWC public website
Revision 17
05 Nov 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 66 to 66
  October 28, 2014
  • Finished entering HV tank names and set values
  • Updated the page describing how to edit the HV Measurements
Added:
>
>
November 5, 2014
  • Fixed up the MSU HAWC public website
Revision 16
28 Oct 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 7 to 7
 

Fix HV/LV links

Things to fix
Changed:
<
<
  • Translate data into more readable form*
  • Update HV editing page
  • Set warning and alarm thresholds
>
>
  • Translate data into more readable form (fixed)
  • Update HV editing page (fixed)
  • Set warning and alarm thresholds (fixed)
 

Fix up HAWC website

Things to fix
  • header image?
Added:
>
>
  • Milagro links
 

Set up Shift Wizard

Things to fix
Line: 60 to 61
  October 22, 2014
  • Started entering HV tank names and set values
  • Downloaded web editor
Added:
>
>
October 27, 2014
  • Continued entering HV tank names and set values
October 28, 2014
  • Finished entering HV tank names and set values
  • Updated the page describing how to edit the HV Measurements
Revision 15
27 Oct 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 59 to 59
 
  • Logged into HAWC public website server and tried to figure out how to edit it
October 22, 2014
  • Started entering HV tank names and set values
Changed:
<
<
  • Codecademy
>
>
  • Downloaded web editor
Revision 14
22 Oct 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 57 to 57
 
  • Practiced Python on Codecademy
October 21, 2014
  • Logged into HAWC public website server and tried to figure out how to edit it
Added:
>
>
October 22, 2014
  • Started entering HV tank names and set values
  • Codecademy
Revision 13
22 Oct 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 57 to 57
 
  • Practiced Python on Codecademy
October 21, 2014
  • Logged into HAWC public website server and tried to figure out how to edit it
Deleted:
<
<
  • read
Revision 12
21 Oct 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 13 to 13
 

Fix up HAWC website

Things to fix
Changed:
<
<
  • Cannot get into server: don't have password
>
>
  • header image?
 

Set up Shift Wizard

Things to fix
Line: 55 to 55
  October 15, 2014
Added:
>
>
October 21, 2014
  • Logged into HAWC public website server and tried to figure out how to edit it
  • read
Revision 11
15 Oct 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014

Joshua Schroeder's Page

Tasks

Added:
>
>

Fix HV/LV links

Things to fix
  • Translate data into more readable form*
  • Update HV editing page
  • Set warning and alarm thresholds
 

Fix up HAWC website

Things to fix
  • Cannot get into server: don't have password

Set up Shift Wizard

Changed:
<
<
Problems discovered so far
>
>
Things to fix
 
  • Can't find TDC DAQ on monitor (fixed)
  • HV Link doesn't seem to work (fixed)
  • LV link doesn't show status (fixed)
  • Disk space link doesn't seem to show status (fixed)
Changed:
<
<
  • Weather/temperature link doesn't seem to work
>
>
  • Weather/temperature link doesn't seem to work
 
  • Need data for status of GTC (doesn't exist yet)
  • Need data for input/output voltages and temperature of UPS (Doesn't exist yet)
  • Need data for status and temperature of HVAC (Doesn't exist yet)
  • logNPE plot link doesn't seem to work (fixed)
  • Main Dashboard link fix (fixed)
Changed:
<
<
  • Reference plots
  • HV/LV data easier to interpret
>
>
  • Reference plots
 

List of Log Entries

September 23, 2014
Line: 47 to 52
 
  • Resolved some issues with Shiftwizard, as noted under the shiftwizard heading
October 13, 2014
  • Did some background reading
Added:
>
>
October 15, 2014
Revision 10
13 Oct 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 45 to 45
 
  • Read how to edit the HAWC website here: did not have username/password that the server would accept when I tried to log in.
October 7, 2014
  • Resolved some issues with Shiftwizard, as noted under the shiftwizard heading
Added:
>
>
October 13, 2014
  • Did some background reading
Revision 9
13 Oct 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014

Joshua Schroeder's Page

Tasks

Added:
>
>

Fix up HAWC website

Things to fix
  • Cannot get into server: don't have password
 

Set up Shift Wizard

Problems discovered so far
Line: 40 to 44
 
  • Read more of A Thin Cosmic Rain
  • Read how to edit the HAWC website here: did not have username/password that the server would accept when I tried to log in.
October 7, 2014
Changed:
<
<
  • Resolved some issues with Shiftwizard, as noted under the shiftwizard heading
>
>
  • Resolved some issues with Shiftwizard, as noted under the shiftwizard heading
Revision 8
07 Oct 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 9 to 9
  Problems discovered so far
  • Can't find TDC DAQ on monitor (fixed)
  • HV Link doesn't seem to work (fixed)
Changed:
<
<
  • LV link doesn't show status
  • Disk space link doesn't seem to show status
>
>
  • LV link doesn't show status (fixed)
  • Disk space link doesn't seem to show status (fixed)
 
  • Weather/temperature link doesn't seem to work
Changed:
<
<
  • Need data for status of GTC
  • Need data for input/output voltages and temperature of UPS
  • Need data for status and temperature of HVAC
  • logNPE plot link doesn't seem to work
  • Main Dashboard link fix
>
>
  • Need data for status of GTC (doesn't exist yet)
  • Need data for input/output voltages and temperature of UPS (Doesn't exist yet)
  • Need data for status and temperature of HVAC (Doesn't exist yet)
  • logNPE plot link doesn't seem to work (fixed)
  • Main Dashboard link fix (fixed)
 
  • Reference plots
  • HV/LV data easier to interpret

List of Log Entries

Line: 40 to 40
 
  • Read more of A Thin Cosmic Rain
  • Read how to edit the HAWC website here: did not have username/password that the server would accept when I tried to log in.
October 7, 2014
Changed:
<
<
*
>
>
  • Resolved some issues with Shiftwizard, as noted under the shiftwizard heading
Revision 7
07 Oct 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 7 to 7
 

Set up Shift Wizard

Problems discovered so far
Changed:
<
<
  • Can't find TDC DAQ on monitor
  • HV Link doesn't seem to work
>
>
  • Can't find TDC DAQ on monitor (fixed)
  • HV Link doesn't seem to work (fixed)
 
  • LV link doesn't show status
  • Disk space link doesn't seem to show status
  • Weather/temperature link doesn't seem to work
Line: 18 to 18
 
  • logNPE plot link doesn't seem to work
  • Main Dashboard link fix
  • Reference plots
Added:
>
>
  • HV/LV data easier to interpret
 

List of Log Entries

September 23, 2014
Line: 36 to 37
 

October 6, 2014
  • Practiced coding
Changed:
<
<
  • Read more of A Thin Cosmic Rain
>
>
  • Read more of A Thin Cosmic Rain
 
  • Read how to edit the HAWC website here: did not have username/password that the server would accept when I tried to log in.
Added:
>
>
October 7, 2014 *
Revision 6
06 Oct 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 32 to 32
 
  • Added a few items to the Shift Wizard problem list
September 30, 2014
  • Practiced coding on Codecademy
Changed:
<
<
  • Read part of A Thin Cosmic Rain
>
>
  • Read part of A Thin Cosmic Rain

October 6, 2014
  • Practiced coding
  • Read more of A Thin Cosmic Rain
  • Read how to edit the HAWC website here: did not have username/password that the server would accept when I tried to log in.
Revision 5
30 Sep 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 30 to 30
 
  • Finished reading the HAWC Construction Proposal
  • Read how to to edit the shift wizard here: I need an Admin account before I can edit it.
  • Added a few items to the Shift Wizard problem list
Added:
>
>
September 30, 2014
  • Practiced coding on Codecademy
  • Read part of A Thin Cosmic Rain
Revision 4
30 Sep 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 27 to 27
  September 29, 2014
Changed:
<
<
  • Finished reading the HAWD Construction Proposal
>
>
  • Finished reading the HAWC Construction Proposal
 
  • Read how to to edit the shift wizard here: I need an Admin account before I can edit it.
  • Added a few items to the Shift Wizard problem list
Revision 3
29 Sep 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014
Line: 16 to 16
 
  • Need data for input/output voltages and temperature of UPS
  • Need data for status and temperature of HVAC
  • logNPE plot link doesn't seem to work
Added:
>
>
  • Main Dashboard link fix
  • Reference plots
 

List of Log Entries

September 23, 2014
Line: 24 to 26
  September 24, 2014
Added:
>
>
September 29, 2014
  • Finished reading the HAWD Construction Proposal
  • Read how to to edit the shift wizard here: I need an Admin account before I can edit it.
  • Added a few items to the Shift Wizard problem list
Revision 2
24 Sep 2014 - Main.JoshSchroder
Line: 1 to 1
 
META TOPICPARENT name="WebHome"
-- JoshSchroder - 23 Sep 2014

Joshua Schroeder's Page

Added:
>
>

Tasks

Set up Shift Wizard

Problems discovered so far
  • Can't find TDC DAQ on monitor
  • HV Link doesn't seem to work
  • LV link doesn't show status
  • Disk space link doesn't seem to show status
  • Weather/temperature link doesn't seem to work
  • Need data for status of GTC
  • Need data for input/output voltages and temperature of UPS
  • Need data for status and temperature of HVAC
  • logNPE plot link doesn't seem to work
 

List of Log Entries

September 23, 2014
  • Tried to figure out the wiki
  • Played with the Shift Wizard
Added:
>
>
September 24, 2014
 
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